SNP Profiles of PA 88 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
AGGGCTCCCTTTCCAAAGCCAGCTAACG
1._RUQ_34
GGCGCTCCCCTTCCAAGGCCAGCTAACG
2._PA_88_[PER]
GGCGCTCCCCTTCCAAGGCCAGCTAACG
3._PA_88_[PER]
GGCGCTCCCCTTCCAAGGCCAGCTAACG
4._GC-01-058-3-13
GGCGCTCCCCTTCCAAGGCCAGCTAACG
5._GC-01-058-3-13
GGCGCTCCCCTTCCAAGGCCAGCTAACG
6._GC-01-058-3-13
GGCGCTCCCCTTCCAAGGCCAGCTAACG
7._GC-01-058-3-13
GGCGCTCCCCTTCCAAGGCCAGCTAACG
8._GC-01-058-3-13
GGCGCTCCCCTTCCAAGGCCAGCTAACG
9._GC-01-058-3-13
GGCGCTCCCCTTCCAAGGCCAGCTAACG
10._GC-01-058-3-13
GGCGCTCCCCTTCCAAGGCCAGCTAACG
11._PA_88_[PER]
GGCGCTCCCCTTCCAAGGCCAGCTAACG
12._PA_88_[PER]
GGCGCTCCCCTTCCAAGGCCAGCTAACG
13._PA_88_[PER]
GGCGCTCCCCTTCCAAGGCCAGCTAACG
14._PA_88_[PER]
GGCGCTCCCCTTCCAAGGCCAGCTAACG
15._PA_88_[PER]
GGCGCTCCCCTTCCAAGGCCAGCTAACG
16._PA_88_[PER]
GGCGCTCCCCTTCCAAGGCCAGCTAACG
17._PA_88_[PER]
GGCGCTCCCCTTCCAAGGCCAGCTAACG
18._PA_88_[PER]
GGCGCTCCCCTTCCAAGGCCAGCTAACG
19._GC-01-058-3-13
GGCGCTCCCCTTCCAAGGCCAGCTAACG
20._GC-01-058-3-13
GGCGCTCCCCTTCCAAGGCCAGCTAACG
21._GC-01-058-3-13
GGCGCTCCCCTTCCAAGGCCAGCTAACG
22._PA_88_[PER]
GGCGCTCCCCTTCCAAGGCCAGCTAACG
23._PA_88_[PER]
GGCGCTCCCCTTCCAAGGCCAGCTAACG
24._GC-01-058-3-13
GGCGCTCCCCTTCCAAGGCCAGCTAACG
25._RUQ_34
GGCGCT__TT___CCAG___
26._PA_88_[PER]
AAGGTTACCCTTCCAAAGCCGGTTAACC
27._GC-01-058-3-13
AAGGTTACCCTTCCAAAGCCGGTTAACC
28._RUQ_34
_CG___TT__GG_AG___
29._PA88[PER]
_CG_______CC_CT__
30._GC-01-58-3-13
GGCGAGCCGGAA_AAGGGGAGAGAACG
31._RUQ_34
GGCGAGCCGGAA_AAGGGGAGAGAACG
 1516171819202122232425262728
_Input profile
TTCCGGGGAATTCCGGGGCTCCAAGGAA
1._RUQ_34
TTCCGGGGAACTACCGGTCTAAAAGGAA
2._PA_88_[PER]
TTCCGGGGAACTACCGGTCTAAAAGGAA
3._PA_88_[PER]
TTCCGGGGAGCTACCGGTCTAAAAGGAA
4._GC-01-058-3-13
TTCCGGGGAGCTACCGGTCTAAAAGGAA
5._GC-01-058-3-13
TTCCGGGGAGCTACCGGTCTAAAAGGAA
6._GC-01-058-3-13
TTCCGGGGAGCTACCGGTCTAAAAGGAA
7._GC-01-058-3-13
TTCCGGGGAGCTACCGGTCTAAAAGGAA
8._GC-01-058-3-13
TTCCGGGGAGCTACCGGTCTAAAAGGAA
9._GC-01-058-3-13
TTCCGGGGAGCTACCGGTCTAAAAGGAA
10._GC-01-058-3-13
TTCCGGGGAGCTACCGGTCTAAAAGGAA
11._PA_88_[PER]
TTCCGGGGAGCTACCGGTCTAAAAGGAA
12._PA_88_[PER]
TTCCGGGGAGCTACCGGTCTAAAAGGAA
13._PA_88_[PER]
TTCCGGGGAGCTACCGGTCTAAAAGGAA
14._PA_88_[PER]
TTCCGGGGAGCTACCGGTCTAAAAGGAA
15._PA_88_[PER]
TTCCGGGGAGCTACCGGTCTAAAAGGAA
16._PA_88_[PER]
TTCCGGGGAGCTACCGGTCTAAAAGGAA
17._PA_88_[PER]
TTCCGGGGAGCTACCGGTCTAAAAGGAA
18._PA_88_[PER]
TTCCGGGGAGCTACCGGTCTAAAAGGAA
19._GC-01-058-3-13
TTCCGGGGAGCTACCGGTCTAAAAGGAA
20._GC-01-058-3-13
TTCCGGGGAGCTACCGGTCTAAAAGGAA
21._GC-01-058-3-13
_CCGGGGAGCTACCGGTCTAAAAGGAA
22._PA_88_[PER]
_CCGGGGAGCTACCGGTCTAAAAGGAA
23._PA_88_[PER]
TTCCGGGGAGCTACCGGTCTAA_GGAA
24._GC-01-058-3-13
TTCCGGGGAGCTACCGGTCTAA_GGAA
25._RUQ_34
_CCGGGG_CTACCGGTCTAAAA_AA
26._PA_88_[PER]
TTCCCGGGGGCTACCCTTTTCCAAGGAA
27._GC-01-058-3-13
TTCCCGGGGGCTACCCTTTTCCAAGGAA
28._RUQ_34
__GGGGAA_ACCG__AA___
29._PA88[PER]
_CCCC___ACCG_____AA
30._GC-01-58-3-13
AAGGCCCC_AGACCGAC_AA_GGAA
31._RUQ_34
AAGGCCCC_AGACCGAC_AA_GGAA
 29303132333435       
_Input profile
CCAAACGGACATGGX_XX_XX_XX_XX_XX_XX_X
1._RUQ_34
CCGGAAGGACAAGGX_XX_XX_XX_XX_XX_XX_X
2._PA_88_[PER]
CCGGAAGGACAAGGX_XX_XX_XX_XX_XX_XX_X
3._PA_88_[PER]
CCGGAAGGACAAGGX_XX_XX_XX_XX_XX_XX_X
4._GC-01-058-3-13
CCGGAAGGACAAGGX_XX_XX_XX_XX_XX_XX_X
5._GC-01-058-3-13
CCGGAAGGACAAGGX_XX_XX_XX_XX_XX_XX_X
6._GC-01-058-3-13
CCGGAAGGACAAGGX_XX_XX_XX_XX_XX_XX_X
7._GC-01-058-3-13
CCGGAAGGACAAGGX_XX_XX_XX_XX_XX_XX_X
8._GC-01-058-3-13
CCGGAAGGACAAGGX_XX_XX_XX_XX_XX_XX_X
9._GC-01-058-3-13
CCGGAAGGACAAGGX_XX_XX_XX_XX_XX_XX_X
10._GC-01-058-3-13
CCGGAAGGACAAGGX_XX_XX_XX_XX_XX_XX_X
11._PA_88_[PER]
CCGGAAGGACAAGGX_XX_XX_XX_XX_XX_XX_X
12._PA_88_[PER]
CCGGAAGGACAAGGX_XX_XX_XX_XX_XX_XX_X
13._PA_88_[PER]
CCGGAAGGACAAGGX_XX_XX_XX_XX_XX_XX_X
14._PA_88_[PER]
CCGGAAGGACAAGGX_XX_XX_XX_XX_XX_XX_X
15._PA_88_[PER]
CCGGAAGGACAAGGX_XX_XX_XX_XX_XX_XX_X
16._PA_88_[PER]
CCGGAAGGACAAGGX_XX_XX_XX_XX_XX_XX_X
17._PA_88_[PER]
CCGGAAGGACAAGGX_XX_XX_XX_XX_XX_XX_X
18._PA_88_[PER]
CCGGAAGGACAAGGX_XX_XX_XX_XX_XX_XX_X
19._GC-01-058-3-13
CCGGAAGGACAAGGX_XX_XX_XX_XX_XX_XX_X
20._GC-01-058-3-13
CCGGAAGGACAAGGX_XX_XX_XX_XX_XX_XX_X
21._GC-01-058-3-13
CCGGAAGGACAAGGX_XX_XX_XX_XX_XX_XX_X
22._PA_88_[PER]
CCGGAAGGACAAGGX_XX_XX_XX_XX_XX_XX_X
23._PA_88_[PER]
CCGGAAGGACAAGGX_XX_XX_XX_XX_XX_XX_X
24._GC-01-058-3-13
CCGGAAGGACAAGGX_XX_XX_XX_XX_XX_XX_X
25._RUQ_34
CCGGAAGGAC__X_XX_XX_XX_XX_XX_XX_X
26._PA_88_[PER]
CTAAAATTAATTGGX_XX_XX_XX_XX_XX_XX_X
27._GC-01-058-3-13
CTAAAATTAATTGGX_XX_XX_XX_XX_XX_XX_X
28._RUQ_34
_GG__AC__X_XX_XX_XX_XX_XX_XX_X
29._PA88[PER]
_GGAA_AC__X_XX_XX_XX_XX_XX_XX_X
30._GC-01-58-3-13
GGGGAACCACAAGGX_XX_XX_XX_XX_XX_XX_X
31._RUQ_34
GGGGAACCACAAGGX_XX_XX_XX_XX_XX_XX_X

Input profile: PA_88_[PER]

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D677
 Dapeng Zhang, 2016

1._PA_88_[PER] RUQ_34

80 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_88_[PER]

80 %
35 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P50 299
 Dapeng Zhang, 2016

3._PA_88_[PER]

78.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 16 > F
 Dapeng Zhang, 2016

4._PA_88_[PER] GC-01-058-3-13

78.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._PA_88_[PER] GC-01-058-3-13

78.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

6._PA_88_[PER] GC-01-058-3-13

78.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

7._PA_88_[PER] GC-01-058-3-13

78.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._PA_88_[PER] GC-01-058-3-13

78.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._PA_88_[PER] GC-01-058-3-13

78.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._PA_88_[PER] GC-01-058-3-13

78.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._PA_88_[PER]

78.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 6 > FP
 Dapeng Zhang, 2016

12._PA_88_[PER]

78.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 1 > FP
 Dapeng Zhang, 2016

13._PA_88_[PER]

78.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 11
 Dapeng Zhang, 2016

14._PA_88_[PER]

78.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 10
 Dapeng Zhang, 2016

15._PA_88_[PER]

78.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 8
 Dapeng Zhang, 2016

16._PA_88_[PER]

78.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 5
 Dapeng Zhang, 2016

17._PA_88_[PER]

78.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 3
 Dapeng Zhang, 2016

18._PA_88_[PER]

78.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

19._PA_88_[PER] GC-01-058-3-13

78.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

20._PA_88_[PER] GC-01-058-3-13

78.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP4
 Mars, 2018

21._PA_88_[PER] GC-01-058-3-13

77.9 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

22._PA_88_[PER]

77.9 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 4 > FP
 Dapeng Zhang, 2016

23._PA_88_[PER]

77.9 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 14
 Dapeng Zhang, 2016

24._PA_88_[PER] GC-01-058-3-13

77.9 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

25._PA_88_[PER] RUQ_34

75 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

26._PA_88_[PER]

67.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 13
 Dapeng Zhang, 2016

27._PA_88_[PER] GC-01-058-3-13

67.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

28._PA_88_[PER] RUQ_34

66.7 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

29._PA_88_[PER] PA88[PER]

63.6 %
11 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

30._PA_88_[PER] GC-01-58-3-13

40.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

31._PA_88_[PER] RUQ_34

40.3 %
31 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1484 2TcSNP1458 3TcSNP1442 4TcSNP1350 5TcSNP1270
6TcSNP1253 7TcSNP1165 8TcSNP1075 9TcSNP1062 10TcSNP1060
11TcSNP998 12TcSNP994 13TcSNP953 14TcSNP929 15TcSNP917
16TcSNP891 17TcSNP872 18TcSNP723 19TcSNP645 20TcSNP619
21TcSNP591 22TcSNP577 23TcSNP560 24TcSNP534 25TcSNP529
26TcSNP469 27TcSNP429 28TcSNP372 29TcSNP242 30TcSNP230
31TcSNP193 32TcSNP150 33TcSNP144 34TcSNP32 35TcSNP25